META-pipe is a Nextflow workflow for annotation and analysis of marine metagenomics samples, which provides insight into phylogenetic diversity, metabolic and functional potential of environmental communities. META-pipe consists of four parts; processing of reads (merging, filtering, 16S rRNA extraction and assembly), taxonomic classification (using reads against RefSeq and MAR databases, and predicted 16S rRNA), binning and functional assignment of predicted coding sequences (CDSs) as shown in the figure below.
META-pipe service
Our service is temporarily offline. However, if you wish to perform any executions, you can send an email with your execution request to the ELIXIR@UiT team via the ELIXIR Norway Helpdesk at support@elixir.no.
